PVA input files for the 20 species used in this study (16
VORTEX files and 4 RAMAS Stage files) are presented below. They can also be downloaded in a zipped file (append2.zip).
AA.OUT ***Output Filename***
Y ***Graphing Files?***
Y ***Details each Iteration?***
1000 ***Simulations***
530 ***Years***
1 ***Reporting Interval***
0 ***Definition of Extinction***
1 ***Populations***
Y ***Inbreeding Depression?***
5.000000 ***Lethal equivalents***
50.000000 ***Percent of genetic load as lethals***
N ***EV concordance between repro and surv?***
5 ***Types Of Catastrophes***
P ***Monogamous, Polygynous, or Hermaphroditic***
11 ***Female Breeding Age***
14 ***Male Breeding Age***
50 ***Maximum Breeding Age***
50.000000 ***Sex Ratio (percent males)***
0 ***Maximum Litter Size (0 = normal distribution) *****
N ***Density Dependent Breeding?***
Pop1
46.60 **breeding
13.70 **EV-breeding
19.000000 ***Pop1: Mean Litter Size***
4.500000 ***Pop1: SD in Litter Size***
62.800000 *FMort age 0
7.000000 ***EV
41.100000 *FMort age 1
13.000000 ***EV
25.000000 *FMort age 2
10.000000 ***EV
25.000000 *FMort age 3
10.000000 ***EV
25.000000 *FMort age 4
10.000000 ***EV
25.000000 *FMort age 5
10.000000 ***EV
20.000000 *FMort age 6
10.000000 ***EV
3.000000 *FMort age 7
1.000000 ***EV
3.000000 *FMort age 8
1.000000 ***EV
3.000000 *FMort age 9
1.000000 ***EV
3.000000 *FMort age 10
1.000000 ***EV
3.000000 *Adult FMort
1.000000 ***EV
62.800000 *MMort age 0
7.000000 ***EV
41.100000 *MMort age 1
13.000000 ***EV
25.000000 *MMort age 2
10.000000 ***EV
25.000000 *MMort age 3
10.000000 ***EV
25.000000 *MMort age 4
10.000000 ***EV
25.000000 *MMort age 5
10.000000 ***EV
20.000000 *MMort age 6
10.000000 ***EV
3.000000 *MMort age 7
1.000000 ***EV
3.000000 *MMort age 8
1.000000 ***EV
3.000000 *MMort age 9
1.000000 ***EV
3.000000 *MMort age 10
1.000000 ***EV
3.000000 *MMort age 11
1.000000 ***EV
3.000000 *MMort age 12
1.000000 ***EV
3.000000 *MMort age 13
1.000000 ***EV
3.000000 *Adult MMort
1.000000 ***EV
1.000000 ***Probability Of Catastrophe 1***
1.000000 ***Severity--Reproduction***
0.680000 ***Severity--Survival***
1.000000 ***Probability Of Catastrophe 2***
1.000000 ***Severity--Reproduction***
0.530000 ***Severity--Survival***
1.000000 ***Probability Of Catastrophe 3***
1.000000 ***Severity--Reproduction***
0.380000 ***Severity--Survival***
1.000000 ***Probability Of Catastrophe 4***
1.000000 ***Severity--Reproduction***
0.230000 ***Severity--Survival***
1.000000 ***Probability Of Catastrophe 5***
1.000000 ***Severity--Reproduction***
0.070000 ***Severity--Survival***
N ***All Males Breeders?***
Y ***Answer--A--Known?***
23.750000 ***Percent Males In Breeding Pool***
Y ***Start At Stable Age Distribution?***
250 ***Initial Population Size***
500 ***K***
0.000000 ***EV--K***
N ***Trend In K?***
N ***Harvest?***
N ***Supplement?***
N ***AnotherSimulation?***
AE.OUT ***Output Filename***
Y ***Graphing Files?***
Y ***Details each Iteration?***
1000 ***Simulations***
115 ***Years***
1 ***Reporting Interval***
0 ***Definition of Extinction***
1 ***Populations***
Y ***Inbreeding Depression?***
3.140000 ***Lethal equivalents***
50.000000 ***Percent of genetic load as lethals***
Y ***EV concordance between repro and surv?***
3 ***Types Of Catastrophes***
P ***Monogamous, Polygynous, or Hermaphroditic***
2 ***Female Breeding Age***
2 ***Male Breeding Age***
12 ***Maximum Breeding Age***
50.000000 ***Sex Ratio (percent males)***
2 ***Maximum Litter Size (0 = normal distribution) *****
N ***Density Dependent Breeding?***
Pop1
100.00 **breeding
0.00 **EV-breeding
57.000000 ***Pop1: Percent Litter Size 1***
50.000000 *FMort age 0
0.000000 ***EV
11.300000 *FMort age 1
0.000000 ***EV
17.100000 *Adult FMort
0.000000 ***EV
50.000000 *MMort age 0
0.000000 ***EV
11.300000 *MMort age 1
0.000000 ***EV
21.400000 *Adult MMort
0.000000 ***EV
41.000000 ***Probability Of Catastrophe 1***
1.000000 ***Severity--Reproduction***
0.973000 ***Severity--Survival***
10.000000 ***Probability Of Catastrophe 2***
1.000000 ***Severity--Reproduction***
0.458000 ***Severity--Survival***
2.000000 ***Probability Of Catastrophe 3***
1.000000 ***Severity--Reproduction***
0.272000 ***Severity--Survival***
N ***All Males Breeders?***
Y ***Answer--A--Known?***
50.000000 ***Percent Males In Breeding Pool***
Y ***Start At Stable Age Distribution?***
250 ***Initial Population Size***
500 ***K***
0.000000 ***EV--K***
N ***Trend In K?***
N ***Harvest?***
N ***Supplement?***
N ***AnotherSimulation?***
AIR.OUT ***Output Filename***
Y ***Graphing Files?***
Y ***Details each Iteration?***
1000 ***Simulations***
235 ***Years***
1 ***Reporting Interval***
0 ***Definition of Extinction***
1 ***Populations***
Y ***Inbreeding Depression?***
3.140000 ***Lethal equivalents***
50.000000 ***Percent of genetic load as lethals***
N ***EV concordance between repro and surv?***
2 ***Types Of Catastrophes***
P ***Monogamous, Polygynous, or Hermaphroditic***
5 ***Female Breeding Age***
5 ***Male Breeding Age***
20 ***Maximum Breeding Age***
50.000000 ***Sex Ratio (percent males)***
12 ***Maximum Litter Size (0 = normal distribution) *****
N ***Density Dependent Breeding?***
pop1
58.00 **breeding
10.00 **EV-breeding
0.000000 ***pop1: Percent Litter Size 1***
0.000000 ***pop1: Percent Litter Size 2***
0.000000 ***pop1: Percent Litter Size 3***
0.000000 ***pop1: Percent Litter Size 4***
0.000000 ***pop1: Percent Litter Size 5***
0.000000 ***pop1: Percent Litter Size 6***
0.000000 ***pop1: Percent Litter Size 7***
10.000000 ***pop1: Percent Litter Size 8***
25.000000 ***pop1: Percent Litter Size 9***
30.000000 ***pop1: Percent Litter Size 10***
25.000000 ***pop1: Percent Litter Size 11***
70.000000 *FMort age 0
10.200000 ***EV
30.000000 *FMort age 1
10.200000 ***EV
20.000000 *FMort age 2
10.200000 ***EV
10.000000 *FMort age 3
10.200000 ***EV
10.000000 *FMort age 4
10.200000 ***EV
10.000000 *Adult FMort
10.200000 ***EV
70.000000 *MMort age 0
10.200000 ***EV
30.000000 *MMort age 1
10.200000 ***EV
20.000000 *MMort age 2
10.200000 ***EV
10.000000 *MMort age 3
10.200000 ***EV
10.000000 *MMort age 4
10.200000 ***EV
10.000000 *Adult MMort
10.200000 ***EV
14.285710 ***Probability Of Catastrophe 1***
0.000000 ***Severity--Reproduction***
1.000000 ***Severity--Survival***
2.000000 ***Probability Of Catastrophe 2***
0.250000 ***Severity--Reproduction***
0.250000 ***Severity--Survival***
N ***All Males Breeders?***
Y ***Answer--A--Known?***
50.000000 ***Percent Males In Breeding Pool***
Y ***Start At Stable Age Distribution?***
250 ***Initial Population Size***
500 ***K***
0.000000 ***EV--K***
N ***Trend In K?***
N ***Harvest?***
N ***Supplement?***
N ***AnotherSimulation?***
AL.OUT ***Output Filename***
Y ***Graphing Files?***
Y ***Details each Iteration?***
1000 ***Simulations***
196 ***Years***
1 ***Reporting Interval***
0 ***Definition of Extinction***
1 ***Populations***
Y ***Inbreeding Depression?***
3.140000 ***Lethal equivalents***
50.000000 ***Percent of genetic load as lethals***
Y ***EV concordance between repro and surv?***
5 ***Types Of Catastrophes***
P ***Monogamous, Polygynous, or Hermaphroditic***
4 ***Female Breeding Age***
5 ***Male Breeding Age***
15 ***Maximum Breeding Age***
38.000000 ***Sex Ratio (percent males)***
5 ***Maximum Litter Size (0 = normal distribution) *****
N ***Density Dependent Breeding?***
pop1
40.00 **breeding
12.50 **EV-breeding
20.000000 ***pop1: Percent Litter Size 1***
37.500000 ***pop1: Percent Litter Size 2***
25.000000 ***pop1: Percent Litter Size 3***
15.000000 ***pop1: Percent Litter Size 4***
50.000000 *FMort age 0
33.300000 ***EV
10.000000 *FMort age 1
3.000000 ***EV
10.000000 *FMort age 2
3.000000 ***EV
10.000000 *FMort age 3
3.000000 ***EV
10.000000 *Adult FMort
3.000000 ***EV
50.000000 *MMort age 0
33.300000 ***EV
10.000000 *MMort age 1
3.000000 ***EV
10.000000 *MMort age 2
3.000000 ***EV
10.000000 *MMort age 3
3.000000 ***EV
10.000000 *MMort age 4
3.000000 ***EV
10.000000 *Adult MMort
3.000000 ***EV
1.000000 ***Probability Of Catastrophe 1***
1.000000 ***Severity--Reproduction***
0.680000 ***Severity--Survival***
1.000000 ***Probability Of Catastrophe 2***
1.000000 ***Severity--Reproduction***
0.530000 ***Severity--Survival***
1.000000 ***Probability Of Catastrophe 3***
1.000000 ***Severity--Reproduction***
0.380000 ***Severity--Survival***
1.000000 ***Probability Of Catastrophe 4***
1.000000 ***Severity--Reproduction***
0.230000 ***Severity--Survival***
1.000000 ***Probability Of Catastrophe 5***
1.000000 ***Severity--Reproduction***
0.070000 ***Severity--Survival***
N ***All Males Breeders?***
Y ***Answer--A--Known?***
50.000000 ***Percent Males In Breeding Pool***
Y ***Start At Stable Age Distribution?***
250 ***Initial Population Size***
500 ***K***
0.000000 ***EV--K***
N ***Trend In K?***
N ***Harvest?***
N ***Supplement?***
N ***AnotherSimulation?***
APC.OUT ***Output Filename***
Y ***Graphing Files?***
Y ***Details each Iteration?***
1000 ***Simulations***
100 ***Years***
1 ***Reporting Interval***
0 ***Definition of Extinction***
1 ***Populations***
Y ***Inbreeding Depression?***
3.140000 ***Lethal equivalents***
50.000000 ***Percent of genetic load as lethals***
Y ***EV concordance between repro and surv?***
2 ***Types Of Catastrophes***
P ***Monogamous, Polygynous, or Hermaphroditic***
1 ***Female Breeding Age***
2 ***Male Breeding Age***
9 ***Maximum Breeding Age***
50.000000 ***Sex Ratio (percent males)***
14 ***Maximum Litter Size (0 = normal distribution) *****
N ***Density Dependent Breeding?***
Pop1
100.00 **breeding
12.50 **EV-breeding
0.000000 ***Pop1: Percent Litter Size 1***
0.000000 ***Pop1: Percent Litter Size 2***
0.000000 ***Pop1: Percent Litter Size 3***
0.000000 ***Pop1: Percent Litter Size 4***
0.000000 ***Pop1: Percent Litter Size 5***
0.000000 ***Pop1: Percent Litter Size 6***
0.000000 ***Pop1: Percent Litter Size 7***
0.000000 ***Pop1: Percent Litter Size 8***
0.000000 ***Pop1: Percent Litter Size 9***
0.100000 ***Pop1: Percent Litter Size 10***
2.400000 ***Pop1: Percent Litter Size 11***
95.000000 ***Pop1: Percent Litter Size 12***
2.400000 ***Pop1: Percent Litter Size 13***
91.400000 *FMort age 0
7.200000 ***EV
40.000000 *Adult FMort
5.000000 ***EV
91.400000 *MMort age 0
7.200000 ***EV
40.000000 *MMort age 1
5.000000 ***EV
40.000000 *Adult MMort
5.000000 ***EV
1.430000 ***Probability Of Catastrophe 1***
1.000000 ***Severity--Reproduction***
0.250000 ***Severity--Survival***
17.400000 ***Probability Of Catastrophe 2***
0.000000 ***Severity--Reproduction***
1.000000 ***Severity--Survival***
N ***All Males Breeders?***
Y ***Answer--A--Known?***
10.000000 ***Percent Males In Breeding Pool***
Y ***Start At Stable Age Distribution?***
250 ***Initial Population Size***
500 ***K***
0.000000 ***EV--K***
N ***Trend In K?***
N ***Harvest?***
N ***Supplement?***
N ***AnotherSimulation?***
BD.OUT ***Output Filename***
Y ***Graphing Files?***
Y ***Details each Iteration?***
1000 ***Simulations***
428 ***Years***
1 ***Reporting Interval***
0 ***Definition of Extinction***
1 ***Populations***
Y ***Inbreeding Depression?***
3.140000 ***Lethal equivalents***
50.000000 ***Percent of genetic load as lethals***
Y ***EV concordance between repro and surv?***
0 ***Types Of Catastrophes***
P ***Monogamous, Polygynous, or Hermaphroditic***
8 ***Female Breeding Age***
6 ***Male Breeding Age***
30 ***Maximum Breeding Age***
50.000000 ***Sex Ratio (percent males)***
1 ***Maximum Litter Size (0 = normal distribution) *****
N ***Density Dependent Breeding?***
pop1
40.00 **breeding
20.00 **EV-breeding
52.700000 *FMort age 0
18.800000 ***EV
20.900000 *FMort age 1
6.270000 ***EV
10.500000 *FMort age 2
3.150000 ***EV
10.500000 *FMort age 3
3.150000 ***EV
10.500000 *FMort age 4
3.150000 ***EV
10.500000 *FMort age 5
3.150000 ***EV
10.500000 *FMort age 6
3.150000 ***EV
10.500000 *FMort age 7
3.150000 ***EV
6.200000 *Adult FMort
1.900000 ***EV
52.700000 *MMort age 0
18.800000 ***EV
20.900000 *MMort age 1
6.270000 ***EV
10.500000 *MMort age 2
3.150000 ***EV
10.500000 *MMort age 3
3.150000 ***EV
10.500000 *MMort age 4
3.150000 ***EV
10.500000 *MMort age 5
3.150000 ***EV
6.200000 *Adult MMort
1.900000 ***EV
Y ***All Males Breeders?***
Y ***Start At Stable Age Distribution?***
250 ***Initial Population Size***
500 ***K***
0.000000 ***EV--K***
N ***Trend In K?***
N ***Harvest?***
N ***Supplement?***
N ***AnotherSimulation?***
BV.OUT ***Output Filename***
Y ***Graphing Files?***
Y ***Details each Iteration?***
1000 ***Simulations***
355 ***Years***
1 ***Reporting Interval***
0 ***Definition of Extinction***
1 ***Populations***
Y ***Inbreeding Depression?***
3.140000 ***Lethal equivalents***
50.000000 ***Percent of genetic load as lethals***
Y ***EV concordance between repro and surv?***
1 ***Types Of Catastrophes***
M ***Monogamous, Polygynous, or Hermaphroditic***
7 ***Female Breeding Age***
7 ***Male Breeding Age***
31 ***Maximum Breeding Age***
50.000000 ***Sex Ratio (percent males)***
1 ***Maximum Litter Size (0 = normal distribution) *****
N ***Density Dependent Breeding?***
Pop1
51.00 **breeding
16.88 **EV-breeding
21.800000 *FMort age 0
8.300000 ***EV
9.40000 *FMort age 1
9.100000 ***EV
9.40000 *FMort age 2
9.100000 ***EV
9.40000 *FMort age 3
9.100000 ***EV
9.40000 *FMort age 4
9.100000 ***EV
9.40000 *FMort age 5
9.100000 ***EV
9.40000 *FMort age 6
9.100000 ***EV
9.40000 *Adult FMort
9.100000 ***EV
21.800000 *MMort age 0
8.300000 ***EV
9.40000 *MMort age 1
9.100000 ***EV
9.40000 *MMort age 2
9.100000 ***EV
9.40000 *MMort age 3
9.100000 ***EV
9.40000 *MMort age 4
9.100000 ***EV
9.40000 *MMort age 5
9.100000 ***EV
9.40000 *MMort age 6
9.100000 ***EV
9.40000 *Adult MMort
9.100000 ***EV
1.000000 ***Probability Of Catastrophe 1***
0.500000 ***Severity--Reproduction***
0.750000 ***Severity--Survival***
Y ***All Males Breeders?***
Y ***Start At Stable Age Distribution?***
250 ***Initial Population Size***
500 ***K***
0.000000 ***EV--K***
N ***Trend In K?***
N ***Harvest?***
N ***Supplement?***
N ***AnotherSimulation?***
EB.OUT ***Output Filename***
Y ***Graphing Files?***
Y ***Details each Iteration?***
1000 ***Simulations***
245 ***Years***
1 ***Reporting Interval***
0 ***Definition of Extinction***
1 ***Populations***
Y ***Inbreeding Depression?***
3.140000 ***Lethal equivalents***
50.000000 ***Percent of genetic load as lethals***
Y ***EV concordance between repro and surv?***
1 ***Types Of Catastrophes***
P ***Monogamous, Polygynous, or Hermaphroditic***
4 ***Female Breeding Age***
5 ***Male Breeding Age***
22 ***Maximum Breeding Age***
50.000000 ***Sex Ratio (percent males)***
1 ***Maximum Litter Size (0 = normal distribution) *****
N ***Density Dependent Breeding?***
Pop1
47.20 **breeding
9.70 **EV-breeding
10.320000 *FMort age 0
5.980000 ***EV
3.530000 *FMort age 1
3.000000 ***EV
6.550000 *FMort age 2
5.532170 ***EV
3.870000 *FMort age 3
2.680000 ***EV
7.480000 *Adult FMort
3.400000 ***EV
9.400000 *MMort age 0
6.695010 ***EV
7.040000 *MMort age 1
6.837070 ***EV
3.290000 *MMort age 2
3.719370 ***EV
3.660000 *MMort age 3
5.420670 ***EV
5.850000 *MMort age 4
5.867160 ***EV
10.380000 *Adult MMort
4.060000 ***EV
1.000000 ***Probability Of Catastrophe 1***
1.000000 ***Severity--Reproduction***
0.100000 ***Severity--Survival***
N ***All Males Breeders?***
Y ***Answer--A--Known?***
78.000000 ***Percent Males In Breeding Pool***
Y ***Start At Stable Age Distribution?***
250 ***Initial Population Size***
500 ***K***
0.000000 ***EV--K***
N ***Trend In K?***
N ***Harvest?***
N ***Supplement?***
N ***AnotherSimulation?***
GLT.OUT ***Output Filename***
Y ***Graphing Files?***
Y ***Details each Iteration?***
1000 ***Simulations***
193 ***Years***
1 ***Reporting Interval***
0 ***Definition of Extinction***
1 ***Populations***
Y ***Inbreeding Depression?***
4.070000 ***Lethal equivalents***
50.000000 ***Percent of genetic load as lethals***
N ***EV concordance between repro and surv?***
4 ***Types Of Catastrophes***
M ***Monogamous, Polygynous, or Hermaphroditic***
4 ***Female Breeding Age***
4 ***Male Breeding Age***
16 ***Maximum Breeding Age***
50.000000 ***Sex Ratio (percent males)***
5 ***Maximum Litter Size (0 = normal distribution) *****
N ***Density Dependent Breeding?***
Pop1
75.70 **breeding
38.20 **EV-breeding
20.770000 ***Pop1: Percent Litter Size 1***
57.940000 ***Pop1: Percent Litter Size 2***
5.420000 ***Pop1: Percent Litter Size 3***
15.210000 ***Pop1: Percent Litter Size 4***
32.800000 *FMort age 0
8.700000 ***EV
19.600000 *FMort age 1
13.300000 ***EV
24.600000 *FMort age 2
7.600000 ***EV
21.000000 *FMort age 3
0.000000 ***EV
12.500000 *Adult FMort
6.700000 ***EV
29.800000 *MMort age 0
7.000000 ***EV
19.700000 *MMort age 1
9.900000 ***EV
23.900000 *MMort age 2
0.000000 ***EV
17.200000 *MMort age 3
7.500000 ***EV
16.000000 *Adult MMort
8.200000 ***EV
7.000000 ***Probability Of Catastrophe 1***
1.000000 ***Severity--Reproduction***
0.900000 ***Severity--Survival***
1.000000 ***Probability Of Catastrophe 2***
1.000000 ***Severity--Reproduction***
0.500000 ***Severity--Survival***
33.333333 ***Probability Of Catastrophe 3***
1.000000 ***Severity--Reproduction***
0.990000 ***Severity--Survival***
5.000000 ***Probability Of Catastrophe 4***
1.000000 ***Severity--Reproduction***
0.950000 ***Severity--Survival***
Y ***All Males Breeders?***
Y ***Start At Stable Age Distribution?***
250 ***Initial Population Size***
500 ***K***
0.000000 ***EV--K***
N ***Trend In K?***
N ***Harvest?***
N ***Supplement?***
N ***AnotherSimulation?***
HIS.OUT ***Output Filename***
Y ***Graphing Files?***
Y ***Details each Iteration?***
1000 ***Simulations***
100 ***Years***
1 ***Reporting Interval***
0 ***Definition of Extinction***
1 ***Populations***
Y ***Inbreeding Depression?***
3.140000 ***Lethal equivalents***
50.000000 ***Percent of genetic load as lethals***
Y ***EV concordance between repro and surv?***
2 ***Types Of Catastrophes***
M ***Monogamous, Polygynous, or Hermaphroditic***
1 ***Female Breeding Age***
1 ***Male Breeding Age***
11 ***Maximum Breeding Age***
50.000000 ***Sex Ratio (percent males)***
0 ***Maximum Litter Size (0 = normal distribution) *****
N ***Density Dependent Breeding?***
Pop1
77.50 **breeding
8.20 **EV-breeding
1.777800 ***Pop1: Mean Litter Size***
0.942600 ***Pop1: SD in Litter Size***
40.100000 *FMort age 0
9.354000 ***EV
35.200000 *Adult FMort
11.081630 ***EV
40.100000 *MMort age 0
9.354000 ***EV
35.200000 *Adult MMort
11.081630 ***EV
7.500000 ***Probability Of Catastrophe 1***
0.780000 ***Severity--Reproduction***
1.000000 ***Severity--Survival***
7.500000 ***Probability Of Catastrophe 2***
1.000000 ***Severity--Reproduction***
0.740000 ***Severity--Survival***
Y ***All Males Breeders?***
Y ***Start At Stable Age Distribution?***
250 ***Initial Population Size***
500 ***K***
0.000000 ***EV--K***
N ***Trend In K?***
N ***Harvest?***
N ***Supplement?***
N ***AnotherSimulation?***
HT.OUT ***Output Filename***
Y ***Graphing Files?***
Y ***Details each Iteration?***
1000 ***Simulations***
100 ***Years***
1 ***Reporting Interval***
0 ***Definition of Extinction***
1 ***Populations***
Y ***Inbreeding Depression?***
3.140000 ***Lethal equivalents***
50.000000 ***Percent of genetic load as lethals***
N ***EV concordance between repro and surv?***
2 ***Types Of Catastrophes***
P ***Monogamous, Polygynous, or Hermaphroditic***
2 ***Female Breeding Age***
1 ***Male Breeding Age***
4 ***Maximum Breeding Age***
50.000000 ***Sex Ratio (percent males)***
10 ***Maximum Litter Size (0 = normal distribution) *****
N ***Density Dependent Breeding?***
Pop1
100.00 **breeding
0.00 **EV-breeding
0.000000 ***Pop1: Percent Litter Size 1***
0.000000 ***Pop1: Percent Litter Size 2***
0.000000 ***Pop1: Percent Litter Size 3***
0.000000 ***Pop1: Percent Litter Size 4***
0.000000 ***Pop1: Percent Litter Size 5***
0.000000 ***Pop1: Percent Litter Size 6***
0.000000 ***Pop1: Percent Litter Size 7***
0.000000 ***Pop1: Percent Litter Size 8***
0.000000 ***Pop1: Percent Litter Size 9***
0.000000 *FMort age 0
0.000000 ***EV
80.000000 *FMort age 1
1.000000 ***EV
80.000000 *Adult FMort
1.000000 ***EV
0.000000 *MMort age 0
0.000000 ***EV
80.000000 *Adult MMort
1.000000 ***EV
10.000000 ***Probability Of Catastrophe 1***
1.00000 ***Severity--Reproduction***
0.900000 ***Severity--Survival***
10.000000 ***Probability Of Catastrophe 2***
1.000000 ***Severity--Reproduction***
0.900000 ***Severity--Survival***
Y ***All Males Breeders?***
Y ***Start At Stable Age Distribution?***
250 ***Initial Population Size***
500 ***K***
0.000000 ***EV--K***
N ***Trend In K?***
N ***Harvest?***
N ***Supplement?***
N ***AnotherSimulation?***
K.OUT ***Output Filename***
Y ***Graphing Files?***
Y ***Details each Iteration?***
1000 ***Simulations***
298 ***Years***
1 ***Reporting Interval***
0 ***Definition of Extinction***
1 ***Populations***
Y ***Inbreeding Depression?***
3.140000 ***Lethal equivalents***
50.000000 ***Percent of genetic load as lethals***
N ***EV concordance between repro and surv?***
2 ***Types Of Catastrophes***
M ***Monogamous, Polygynous, or Hermaphroditic***
5 ***Female Breeding Age***
5 ***Male Breeding Age***
25 ***Maximum Age***
50.00000 ***Sex Ratio***
4 ***Maximum Litter Size (0 = normal distribution) *****
N ***Density Dependent Breeding?***
pop1
40.00 **breeding
5.000000 ***EV--Reproduction***
37.500000 ***Population 1: Percent Litter Size 1***
50.000000 ***Population 1: Percent Litter Size 2***
12.500000 ***Population 1: Percent Litter Size 3***
40.000000 *FMort age 0
10.000000 ***EV--FemaleMortality***
10.000000 *FMort age 1
3.000000 ***EV--FemaleMortality***
5.000000 *FMort age 2
2.000000 ***EV--FemaleMortality***
5.000000 *FMort age 3
2.000000 ***EV--FemaleMortality***
5.000000 *FMort age 4
2.000000 ***EV--FemaleMortality***
5.000000 *Adult FMort
2.000000 ***EV--AdultFemaleMortality***
40.000000 *MMort age 0
10.000000 ***EV--MaleMortality***
10.000000 *MMort age 1
3.000000 ***EV--MaleMortality***
5.000000 *MMort age 2
2.000000 ***EV--MaleMortality***
5.000000 *MMort age 3
2.000000 ***EV--MaleMortality***
5.000000 *MMort age 4
2.000000 ***EV--MaleMortality***
5.000000 *Adult MMort
2.000000 ***EV--AdultMaleMortality***
4.000000 ***Probability Of Catastrophe 1***
0.250000 ***Severity--Reproduction***
0.800000 ***Severity--Survival***
1.000000 ***Probability Of Catastrophe 2***
0.950000 ***Severity--Reproduction***
0.100000 ***Severity--Survival***
N ***All Males Breeders?***
90.000000 ***Percent Males In Breeding Pool***
Y ***Start At Stable Age Distribution?***
250 ***Initial Population Size***
500 ***K***
0.000000 ***EV--K***
N ***Trend In K?***
N ***Harvest?***
N ***Supplement?***
N ***AnotherSimulation?***
MG.OUT ***Output Filename***
Y ***Graphing Files?***
Y ***Details each Iteration?***
1000 ***Simulations***
563 ***Years***
1 ***Reporting Interval***
0 ***Definition of Extinction***
1 ***Populations***
Y ***Inbreeding Depression?***
3.140000 ***Lethal equivalents***
50.000000 ***Percent of genetic load as lethals***
Y ***EV concordance between repro and surv?***
1 ***Types Of Catastrophes***
P ***Monogamous, Polygynous, or Hermaphroditic***
10 ***Female Breeding Age***
13 ***Male Breeding Age***
40 ***Maximum Breeding Age***
50.000000 ***Sex Ratio (percent males)***
1 ***Maximum Litter Size (0 = normal distribution) *****
N ***Density Dependent Breeding?***
pop1
31.30 **breeding
5.00 **EV-breeding
23.300000 *FMort age 0
5.800000 ***EV
11.700000 *FMort age 1
2.930000 ***EV
0.000000 *FMort age 2
0.500000 ***EV
7.400000 *FMort age 3
1.900000 ***EV
2.900000 *FMort age 4
0.700000 ***EV
0.000000 *FMort age 5
0.500000 ***EV
0.000000 *FMort age 6
0.500000 ***EV
3.800000 *FMort age 7
0.950000 ***EV
4.400000 *FMort age 8
1.100000 ***EV
0.000000 *FMort age 9
0.500000 ***EV
1.000000 *Adult FMort
0.250000 ***EV
20.000000 *MMort age 0
5.000000 ***EV
1.600000 *MMort age 1
0.400000 ***EV
5.500000 *MMort age 2
1.400000 ***EV
6.400000 *MMort age 3
1.600000 ***EV
2.500000 *MMort age 4
0.700000 ***EV
0.000000 *MMort age 5
0.500000 ***EV
0.000000 *MMort age 6
0.500000 ***EV
0.000000 *MMort age 7
0.500000 ***EV
0.000000 *MMort age 8
0.500000 ***EV
0.000000 *MMort age 9
0.500000 ***EV
0.000000 *MMort age 10
0.500000 ***EV
0.000000 *MMort age 11
0.500000 ***EV
0.000000 *MMort age 12
0.500000 ***EV
2.500000 *Adult MMort
0.500000 ***EV
1.000000 ***Probability Of Catastrophe 1***
1.000000 ***Severity--Reproduction***
0.250000 ***Severity--Survival***
N ***All Males Breeders?***
Y ***Answer--A--Known?***
70.000000 ***Percent Males In Breeding Pool***
Y ***Start At Stable Age Distribution?***
250 ***Initial Population Size***
500 ***K***
0.000000 ***EV--K***
N ***Trend In K?***
N ***Harvest?***
N ***Supplement?***
MM.OUT ***Output Filename***
Y ***Graphing Files?***
Y ***Details each Iteration?***
1000 ***Simulations***
375 ***Years***
1 ***Reporting Interval***
0 ***Definition of Extinction***
1 ***Populations***
Y ***Inbreeding Depression?***
3.140000 ***Lethal equivalents***
50.000000 ***Percent of genetic load as lethals***
Y ***EV concordance between repro and surv?***
1 ***Types Of Catastrophes***
P ***Monogamous, Polygynous, or Hermaphroditic***
7 ***Female Breeding Age***
7 ***Male Breeding Age***
25 ***Maximum Breeding Age***
50.000000 ***Sex Ratio (percent males)***
0 ***Maximum Litter Size (0 = normal distribution) *****
N ***Density Dependent Breeding?***
Pop1
19.40 **breeding
10.00 **EV-breeding
10.000000 ***Pop1: Mean Litter Size***
10.000000 ***Pop1: SD in Litter Size***
90.000000 *FMort age 0
3.000000 ***EV
10.000000 *FMort age 1
3.000000 ***EV
10.000000 *FMort age 2
3.000000 ***EV
5.000000 *FMort age 3
2.000000 ***EV
5.000000 *FMort age 4
2.000000 ***EV
5.000000 *FMort age 5
2.000000 ***EV
5.000000 *FMort age 6
2.000000 ***EV
2.600000 *Adult FMort
0.500000 ***EV
90.000000 *MMort age 0
3.000000 ***EV
10.000000 *MMort age 1
3.000000 ***EV
10.000000 *MMort age 2
3.000000 ***EV
5.000000 *MMort age 3
2.000000 ***EV
5.000000 *MMort age 4
2.000000 ***EV
5.000000 *MMort age 5
2.000000 ***EV
5.000000 *MMort age 6
2.000000 ***EV
1.600000 *Adult MMort
0.300000 ***EV
5.000000 ***Probability Of Catastrophe 1***
0.700000 ***Severity--Reproduction***
0.700000 ***Severity--Survival***
Y ***All Males Breeders?***
Y ***Start At Stable Age Distribution?***
250 ***Initial Population Size***
500 ***K***
0.000000 ***EV--K***
N ***Trend In K?***
N ***Harvest?***
N ***Supplement?***
N ***AnotherSimulation?***
PRP.OUT ***Output Filename***
Y ***Graphing Files?***
Y ***Details each Iteration?***
1000 ***Simulations***
208 ***Years***
1 ***Reporting Interval***
0 ***Definition of Extinction***
1 ***Populations***
Y ***Inbreeding Depression?***
3.140000 ***Lethal equivalents***
50.000000 ***Percent of genetic load as lethals***
Y ***EV concordance between repro and surv?***
1 ***Types Of Catastrophes***
M ***Monogamous, Polygynous, or Hermaphroditic***
4 ***Female Breeding Age***
4 ***Male Breeding Age***
15 ***Maximum Breeding Age***
50.000000 ***Sex Ratio (percent males)***
5 ***Maximum Litter Size (0 = normal distribution) *****
N ***Density Dependent Breeding?***
Pop1
30.70 **breeding
0.00 **EV-breeding
29.600000 ***Pop1: Percent Litter Size 1***
26.000000 ***Pop1: Percent Litter Size 2***
37.100000 ***Pop1: Percent Litter Size 3***
3.700000 ***Pop1: Percent Litter Size 4***
32.500000 *FMort age 0
3.300000 ***EV
15.200000 *FMort age 1
1.500000 ***EV
15.200000 *FMort age 2
1.500000 ***EV
15.200000 *FMort age 3
1.500000 ***EV
8.700000 *Adult FMort
0.900000 ***EV
32.500000 *MMort age 0
3.300000 ***EV
15.200000 *MMort age 1
1.500000 ***EV
15.200000 *MMort age 2
1.500000 ***EV
15.200000 *MMort age 3
1.500000 ***EV
8.700000 *Adult MMort
0.900000 ***EV
3.000000 ***Probability Of Catastrophe 1***
0.000000 ***Severity--Reproduction***
0.500000 ***Severity--Survival***
Y ***All Males Breeders?***
Y ***Start At Stable Age Distribution?***
250 ***Initial Population Size***
500 ***K***
0.000000 ***EV--K***
N ***Trend In K?***
N ***Harvest?***
N ***Supplement?***
N ***AnotherSimulation?***
SBT.OUT ***Output Filename***
Y ***Graphing Files?***
Y ***Details each Iteration?***
1000 ***Simulations***
273 ***Years***
1 ***Reporting Interval***
0 ***Definition of Extinction***
1 ***Populations***
Y ***Inbreeding Depression?***
3.140000 ***Lethal equivalents***
50.000000 ***Percent of genetic load as lethals***
Y ***EV concordance between repro and surv?***
0 ***Types Of Catastrophes***
P ***Monogamous, Polygynous, or Hermaphroditic***
8 ***Female Breeding Age***
8 ***Male Breeding Age***
40 ***Maximum Breeding Age***
50.000000 ***Sex Ratio (percent males)***
0 ***Maximum Litter Size (0 = normal distribution) *****
N ***Density Dependent Breeding?***
Pop1
100.00 **breeding
0.00 **EV-breeding
3.745000 ***Pop1: Mean Litter Size***
1.140000 ***Pop1: SD in Litter Size***
27.900000 *FMort age 0
5.900000 ***EV
27.900000 *FMort age 1
5.900000 ***EV
27.900000 *FMort age 2
5.900000 ***EV
27.900000 *FMort age 3
5.900000 ***EV
27.900000 *FMort age 4
5.900000 ***EV
27.900000 *FMort age 5
5.900000 ***EV
27.900000 *FMort age 6
5.900000 ***EV
27.900000 *FMort age 7
5.900000 ***EV
27.900000 *Adult FMort
5.900000 ***EV
27.900000 *MMort age 0
5.900000 ***EV
27.900000 *MMort age 1
5.900000 ***EV
27.900000 *MMort age 2
5.900000 ***EV
27.900000 *MMort age 3
5.900000 ***EV
27.900000 *MMort age 4
5.900000 ***EV
27.900000 *MMort age 5
5.900000 ***EV
27.900000 *MMort age 6
5.900000 ***EV
27.900000 *MMort age 7
5.900000 ***EV
27.900000 *Adult MMort
5.900000 ***EV
Y ***All Males Breeders?***
Y ***Start At Stable Age Distribution?***
250 ***Initial Population Size***
500 ***K***
0.000000 ***EV--K***
N ***Trend In K?***
N ***Harvest?***
N ***Supplement?***
N ***AnotherSimulation?***
RAMAS/stage input file (1.4) 112
Bay Checkerspot Butterfly
Dick's examples
1000
100
-Drivers-
1
Rnorm
2
0
1
-Parameters-
6
N
1/ins((2*[st1]),1,10000000)
F
({N}+(1-{N})*tle(tim,1,0.0,{F}))/(1+{con}*{N}))
Con
0.25
Rinbr
exp([r])*exp(-1*({F}*1.57))
K
[st1]/500
r
0.128 + (0.898 * [Rnorm])
-Stages-
1
st1
250
({st1}*[Rinbr])/max(1,[K])
-Tallies-
2
Total
1
{st1}
Hcheck
1
1-[F]
-Views-
1
1
1
0
0
0
100
1
0
0.99
0
-End of file-
RAMAS/stage input file (1.4) 20
Mariposa Lily, C. tiburonensis
1000
500
-Drivers-
8
p11
2
0.74
0.55
p12
2
0.05
0.003
p13
2
1.11
1.23
p21
3
0.24
0.014
p22
3
0.87
0.19
p23
3
0.04
0.001
p32
3
0.08
0.001
p33
3
0.95
0.23
-Parameters-
8
N
(1/ins((2*[St2]+[St3]),1,10000000))/11
F
([N]+(1-[N])*tle(tim,1,0,[F]))/(1+[Con]*[N])
Sinbr
[p21]*exp(-1*([F]*1.57))
Finbr
{p11}*exp(-1*([F]*1.57))
Con
0.25
cat
if1(uni(0,1)+1/50,0.25,1.0)
KM
500
K
({St2}+{St3})/[KM]
-Stages-
3
St1
206
poi(pos([Finbr])ù{St1})+poi(pos([p12])ù{St2})+poi(pos([p13])ù{St3})
St2
181
(bin(pro([sinbr]),{St1}*[cat])+bin(pro([p22]),{St2}*[cat])+bin(pro([p23]),{St3}*[cat]))/max(1,[K])
St3
69
(bin(pro([p32]),{St2}*[cat])+bin(pro([p33]),{St3}*[cat]))/max(1,[K])
-Tallies-
2
Total
1
[St2]+[St3]
Hcheck
1
1-[F]
-Views-
1
1
1
0
0
9
0
0.99
0
-End of file-
RAMAS/stage input file (1.4) 73
Land Snail
1000
1000
-Drivers-
2
Rnorm
3
0
1
Cat
1
0
1
-Parameters-
14
K
({st2}+{st3}+{st4})/[KM]
N
(1/ins((2*[st2]+[st3]+[st4]),1,10000000))/4.5
F
([N]+(1-[N])*tle(tim,1,0,[F]))/(1+[Con]*[N])
Sinbr
[s1]*exp(-1*([F]*1.57))
Con
0.25
KM
500
CatS
if1( ([Cat]+0.18), 1, 1)
fec2
0.342 + (0.171 * [Rnorm])
fec3
4.446 + (2.223 * [Rnorm])
fec4
6.84 + (3.42 * [Rnorm])
s1
0.076 + (0.0 * [Rnorm])
s2
0.8 + (0.12 + [Rnorm])
s3
0.75 + (0.11 * [Rnorm])
s4
0.56 + (0.08 * [Rnorm])
-Stages-
4
st1
1035
(poi(pos({fec2}*{st2}))+poi(pos({fec3}*{st3}))+poi(pos({fec4}*{st4})))/max(1,{k})
st2
80
(bin(pro(({cats}*{sinbr})),{st1}))/max(1,{k})
st3
65
(bin(pro(({cats}*{s2})),{st2}))/max(1,{k})
st4
105
(bin(pro({cats}*{s3}),{st3})+bin(pro({cats}*{s4}),{st4}))/max(1,{k})
-Tallies-
2
Total
10
[st2]+[st3]+[st4]
Hcheck
10
1-[F]
-Views-
1
0
1
0
0
0
1000.4
1
-0.429
581.231
0
-End of file-
RAMAS/stage input file (1.4) 13
Sentry Milk Vetch
1000
200
-Drivers-
17
f13
2
0.05
0.001
f14
2
0.48
0.094
f15
2
1.52
0.946
p21
3
0.461
0.025
p22
3
0.521
0.064
p31
3
0.259
0.007
p32
3
0.24
0.051
p33
3
0.748
0.005
p34
3
0.123
0.015
p35
3
0.02
0.01
p41
3
0.025
0.01
p42
3
0.025
0.01
p43
3
0.100
0.009
p44
3
0.783
0.031
p45
3
0.096
0.011
p54
3
0.042
0.004
p55
3
0.616
0.129
-Parameters-
7
N
(1/ins((2*[SR]+[MR]+[LR]),1,10000000))/9
F
([N]+(1-[N])*tle(tim,1,0,[F]))/(1+[Con]*[N])
Sinbr
[p21]*exp(-1*([F]*1.57))
Con
0.25
KM
500
K
({S}+{NR}+{SR}+{MR}+{LR})/{KM}
cat
if1(uni(0,1)+1/50,0.25,1.0)
-Stages-
5
S
42
(poi(pos([f13])ù{SR})+poi(pos([f14])ù{MR})+poi(pos([f15])ù{LR}))/max(1,[K])
NR
39
(bin(pro([sinbr]*[cat]),{S})+bin(pro([p22]*[cat]),{NR}))/max(1,[K])
SR
105
(bin(pro([p31]*[cat]),{S})+bin(pro([p32]*[cat]),{NR})+bin(pro([p33]*[cat]),{SR})+bin(pro([p34]*[cat]),{MR})+bin(pro([p35]*[cat]),{LR}))/max(1,[K])
MR
58
(bin(pro([p41]*[cat]),{S})+bin(pro([p42]*[cat]),{NR})+bin(pro([p43]*[cat]),{SR})+bin(pro([p44]*[cat]),{MR})+bin(pro([p45]*[cat]),{LR}))/max(1,[K])
LR
6
(bin(pro([p54]*[cat]),{MR})+bin(pro([p55]*[cat]),{LR}))/max(1,[K])
-Tallies-
2
Total
1
[S]+[NR]+[SR]+[MR]+[LR]
Hcheck
1
1-[F]
-Views-
0
-End of file-